- 1. Preferences : Edit your preference to set your own values of the image width, the zoom factor, UTR regions and promoter, to hide or show a set of data, as well as to change display shapes, sizes, colors and track spans instead of default settings. It has less priority than the iView Tool.
- 2. Search : To open a browser window by querying a gene, a BAC, or data (cDNA, T-DNA) and function. For example: OsIFCD000001 or AY018939.
- 3. Locate : To open browser window by positiohing its location (chromosome and position).
- 4. Fetch : To retrieve all displayed data from a chromosome region. For example: 1234-2345 or W/1234-2345.
- 5. mText : It is now evolved to accept multiple search for both gene list or cDNA/T-DNA/other list to retrieve related or hited data or genes. For example:
please choose type: Gene for gene list or Data for cDNA/T-DNA list.
OsIFCD000001
OsIBSD048474
or
AY018939
DAK2A10
- 6. iSectR : iSect (R) tool to retrieve sequence from a specific chromosome region. For example : 1234-2345 or 1234-2345,3456-4567.
- 7. iSectL : iSect (L) tool to retrieve sequences from genome by list of data names or list of genome mapping data. For example:
OsIFCD000001
AY018939
DAK2A10
or
query1 Chr01 0.0 W/1234-2345
search2 Chr02 0.0 C/1234-2345,3456-4567
- 8. PrimerL : iSect primer (L) tool to design primers according to a list of data names existed or a list of genome mapping data. For example:
OsIFCD000001
AY018939
DAK2A10
or
query1 Chr01 0.0 W/1234-2345
search2 Chr02 0.0 C/1234-2345,3456-4567
- 9. PrimerS : iSect primer (S) tool to design primers from user input sequences. For example:
>YourInput.fa
CTCGCTGGCCTGTTCAGGTGAATCTTAGTATCGTTTTGTGTCCATGTTGCCTCTACTTCG
CCTGCTTCTGGTGACTTGAATTCTCTCTTTGTTTTGGGCAGCTTCGGGAACCTTCCACAT
CCGAAGATGCTGAATTCGCTTCTATTTTGCGGACTCTCAAGGACAGTTTTGATAACGCAT
TCACTGCTATGATTTCCTTCCAGACGAAGAATTCCGAGCGCATATTCAGCACAGGTATAA
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