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a. Genome : BGI-RIS sequenced and assembled rice indica 9311 pseudo-molecules (Jan-26-2005) and annotation added by SIGnAL (Jul-24-2007).
b. T-DNA/Ds FST
- 1. Postech PFG T-DNA, S. Korea [Publication]
- 2. Rice Mutant Data, Huazhong Agricultural University, China [Publication]
- 3. Taiwan Rice Insertion Mutant (TRIM), Academia Sinica
- 4. NIAS Tos17 insertion mutants [RTIM], Japan [Publication]
- 5. CIRAD / Genoplante oryza tag lines, France [Publication]
- 6. Zhejiang Univ. rice T-DNA, China [Publication]
- 7. UCD dSpm/Ds, USA
- 8. CSIRO Ac/Ds, Australia [Publication]
- 9. PSNU Ds, Korea
- 10. EU-OSTID Ds, Netherlands
- 11. SHIP T-DNA, China.
c. cDNA and others
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| Categery | Group | Sequences | Mapped | Update |
|---|
| Gene | BGI | | 48,372 | 08/27/2007 |
| FgeneSH | | 47,316 | 08/27/2007 |
| Insertions | RTIM | 18,024 | 17,803 | 08/27/2007 |
| Genoplante | 29,262 | 27,840 | 10/22/2007 |
| ZJU T-DNA | 741 | 702 | 08/27/2007 |
| UCD FST | 17,730 | 17,208
dSpm: 12,457
Ds: 4,751 | 10/12/2009 |
| TRIM FST | 11,799 | 11,491 | 06/05/2008 |
| CSIRO FST | 611 | 584 | 08/27/2007 |
| RMD FST | 33,197 | 32,849(17K) | 01/05/2010 |
| PFG T-DNA | 107,171 | 105,516 | 01/25/2010 |
| GSNU Ds | 1,072 | 1,031 | 08/27/2007 |
| EU-OSTID Ds | 1,315 | 1,267 | 08/27/2007 |
| SHIP T-DNA | 10,381 | 10,092 (7,630 lines) | 01/05/2010 |
| Full-length cDNAs | KOME | 35,708 | 36,740 | 02/18/2009 |
| RiCD indica | 10,083 | 9,369 (9,205) | 10/27/2009 |
| Community | 2,880 | 2,905 | 01/21/2010 |
| EST indica contigs | | 234,676 | 221,106
ctg: 22,796 | 08/27/2007 |
| Markers (AFLP,RFLP,RAPD,STS..) | | | 8,001 | 08/27/2007 |
| Homology cDNA | Wheat | | 1,064 | 02/27/2008 |
| Maize | | 6,176 | 02/27/2008 |
| Barley | | 456 | 02/27/2008 |
| Brassica | | 866 | 02/27/2008 |
| Yale Tiling Array | | | 14,744,624 oligos | 08/27/2007 |
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